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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9512116_9514145_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9512116 - 9514145
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTAATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTCTTTTAATA
Flanking Amino Acid:
HEASARTDQEENTSKLVNIL
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.1
0.72
0.9
77.5
34.6
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
70.2
0.63
1.1
74.5
30.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743