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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9514187_9515568_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9514187 - 9515568
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
TCACATCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCCTTCATAACT
Flanking Amino Acid:
ALTESNVNIPDNGVHEASAR
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
79.1
34.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.9
68.6
36.8
Minor 5ss
45.6
-0.5
2.9
66.8
44.1
Minor BPS
59.3
0.37
1.7
71.76
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743