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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95156490_95157949_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
95156490 - 95157949
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTCA
5'SS Class:
weak_major
3'SS Sequence:
CTTTTGCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCTTCACAACA
Flanking Amino Acid:
FVKDMMELVKPSISGVDLDK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
70.3
36.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.3
0.75
0.8
77.4
31.4
Minor 5ss
57.5
0.25
1.9
68.3
42.4
Minor BPS
49.8
-0
1.9
63.87
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039497
95156361 - 95159969
3609