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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9515824_9521399_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9515824 - 9521399
Intron Length:
5576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTTG
5'SS Class:
major
3'SS Sequence:
TTTTGTGATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTGTGCTTATGT
Flanking Amino Acid:
EPKDPLSVVDETLIKGVLKD
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
65.5
40.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
77.8
0.63
1
70
45
Minor 5ss
39.8
-1.1
3.4
51.8
47.3
Minor BPS
49.8
0.07
2.3
75.27
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743