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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95158821_95159913_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95158821 - 95159913
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CATAATTTAAAT
Flanking Amino Acid:
DGRLDLNDLARILALQENFL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
52.7
0.16
1.7
68.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039497
95156361 - 95159969
3609