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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95169906_95170715_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95169906 - 95170715
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TCTTTCCTGACT
Flanking Amino Acid:
SGFISAGELKDFLRDLFLQH
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
76.1
0.59
0.9
69.3
35.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
66.1
0.59
1.7
83.44
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018697
95168840 - 95171839
3000