About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95170773_95171424_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95170773 - 95171424
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCTGTATC
5'SS Class:
major
3'SS Sequence:
TATCCCTATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTATCCCTATCC
Flanking Amino Acid:
PLDNSVEFMRIWRSYDADSS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
68.8
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
0.9
66.5
39.4
Minor 5ss
41.4
-1
2.5
46.5
41.9
Minor BPS
54
0.11
2
68.05
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018697
95168840 - 95171839
3000