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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95186635_95191871_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95186635 - 95191871
Intron Length:
5237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
GTGTTTTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGTAA
U12 Branch Point Sequence:
TCCTCCGTTAGT
Flanking Amino Acid:
SPTIRSFSQEAAKRSPGQQS
Intron Amino Acid Position:
1331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
50.6
0.02
1.4
52.1
43.5
Major PPT
77.4
0.62
1
72.9
42.2
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
45.6
-0.2
2.5
67.36
49.2

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016901
95186498 - 95368926
182429