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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95192007_95194550_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95192007 - 95194550
Intron Length:
2544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TGGTACTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AACTTCTCACCT
Flanking Amino Acid:
PQKPRSASRTEDAPESPSGP
Intron Amino Acid Position:
1286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
68.9
0.42
1
61.5
39.8
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
49.8
0.07
1.8
67.27
43.5

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429