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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95194782_95196965_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95194782 - 95196965
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
CTGTTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGCACCTGAATT
Flanking Amino Acid:
SSERLDGSGTVPKLQQTLPE
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.4
0.66
0.8
78.1
35
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
62.7
0.48
1.5
74.63
42

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429