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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95197045_95201426_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95197045 - 95201426
Intron Length:
4382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGCA
5'SS Class:
major
3'SS Sequence:
ATCATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTATTATTAACA
Flanking Amino Acid:
QEKRAASAQKKLGNDTASRE
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.2
34.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.7
0.69
0.8
77.5
36.1
Minor 5ss
23.4
-3.1
3.3
29.7
43.3
Minor BPS
65.5
0.48
1.6
73.02
38.6

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429