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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95201860_95203149_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95201860 - 95203149
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
TGTCTTTTATCA
Flanking Amino Acid:
FTKKVTKMDTKRPSTKSSDG
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
81.7
0.71
0.9
81.6
34.7
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
58.5
0.26
1.6
68.98
37.4

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429