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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95203257_95207532_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95203257 - 95207532
Intron Length:
4276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTCTA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTATTTTACACT
Flanking Amino Acid:
NKKQQPSQAAVSAGVAPEGD
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
83.9
0.76
0.9
84.9
30
Minor 5ss
34.5
-1.8
3.1
46.8
42.6
Minor BPS
50.2
0.09
2.1
75.56
41.8

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429