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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9521875_9534079_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9521875 - 9534079
Intron Length:
12205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTATTT
5'SS Class:
major
3'SS Sequence:
CTACTCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTATTTCTACCT
Flanking Amino Acid:
RKKNNKASVKSYIYNDPIRY
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
66.5
39.7
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
74.1
0.54
0.8
66.2
35.6
Minor 5ss
38.9
-1.2
3.4
57
47.1
Minor BPS
52.7
0.16
1.9
76.75
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743