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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95244767_95247289_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95244767 - 95247289
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
AKALQINTKLRTVIWDKNNI
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
86
0.81
0.7
84.6
23.1
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429