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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95252907_95252993_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95252907 - 95252993
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTTCCTAACT
Flanking Amino Acid:
LGKNFNNMKSKNLTPVLDNL
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
67.2
0.62
1.7
82.68
38.5

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429