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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95275749_95279516_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95275749 - 95279516
Intron Length:
3768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TCTGTCTGTATT
Flanking Amino Acid:
ELVLENAGLRTDFAQKLASA
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
48
-0
1.9
67.51
43.7

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429