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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95279606_95281809_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95279606 - 95281809
Intron Length:
2204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CGTTCTTTAACA
Flanking Amino Acid:
TKLSSKDLKLSTDVCEQILR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.9
31.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.3
0.73
1
80.6
37
Minor 5ss
37.9
-1.4
2.7
47.4
36.1
Minor BPS
79.2
0.91
1.1
79.83
36.4

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429