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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95286755_95286887_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95286755 - 95286887
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GTATTTTTAACA
Flanking Amino Acid:
GFPYREEVQWDVDTIYLTQD
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
77.4
0.62
1
73.5
40.5
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
74.6
0.77
1.1
76.5
34.2

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016901
95186498 - 95368926
182429
ENSAPLT00000035110
95186498 - 95368926
182429