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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95291933_95295832_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95291933 - 95295832
Intron Length:
3900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTTTTTGACT
Flanking Amino Acid:
FLLTSRIPTKLELTFSYLEI
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.9
0.76
0.8
78.5
34.7
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
75.9
0.9
1.1
85.97
34.5

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429