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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95295884_95365485_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95295884 - 95365485
Intron Length:
69602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCCTAACA
Flanking Amino Acid:
KGDKVENKILILASCRAFLL
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.3
0.79
0.8
81.8
28.7
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
75.9
0.81
1.6
87.87
29.2

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429