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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95365584_95368886_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95365584 - 95368886
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
ESSELPRELIESARDVIGRK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
CARMIL1
Ensembl Gene ID:
ENSAPLG00000016185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035110
95186498 - 95368926
182429
ENSAPLT00000016901
95186498 - 95368926
182429