Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95461121_95465139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95461121 - 95465139

Intron Length:

4019

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CCCACTCTGACC

Flanking Amino Acid:

LLGEFCIKMKGLAGFARLCP

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

75.1

33.1

Major BPS

69.1

0.47

60.7

37.6

Major PPT

81.1

0.7

73.3

31.6

Minor 5ss

-1.8

3.1

45.2

42.8

Minor BPS

46.2

-0.3

1.7

50.48

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013099

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047939

95427169 - 95485417

58249

ENSAPLT00000013698

95427292 - 95485417

58126