About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95465184_95466022_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95465184 - 95466022
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GATTTCTCAAGA
Flanking Amino Acid:
ARLCPGDQYEIFMRYGRQRW
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
53.9
0.12
1.8
65.37
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047939
95427169 - 95485417
58249
ENSAPLT00000013698
95427292 - 95485417
58126