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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95468173_95468912_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95468173 - 95468912
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTGTGTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACAATTTTATTT
Flanking Amino Acid:
TIKLNLEITWYPFDVEDLTP
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.5
0.6
1
69.6
41.6
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
48
-0
1.5
58.87
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047939
95427169 - 95485417
58249
ENSAPLT00000013698
95427292 - 95485417
58126