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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95469043_95471303_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95469043 - 95471303
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
ATTATCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATT
Flanking Amino Acid:
TPTFKDHSFFSNLPDDVFEN
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
61
43.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82
0.72
0.8
78.3
35.4
Minor 5ss
43.1
-0.8
3.1
64
41.1
Minor BPS
70.4
0.72
1.5
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047939
95427169 - 95485417
58249