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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95469757_95471303_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95469757 - 95471303
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
ATTATCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATT
Flanking Amino Acid:
LSPKAGLELYSNLPDDVFEN
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.5
37
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82
0.72
0.8
78.3
35.4
Minor 5ss
33.8
-1.8
3
47.3
41.1
Minor BPS
70.4
0.72
1.5
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013698
95427292 - 95485417
58126