Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95471997_95474602_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95471997 - 95474602

Intron Length:

2606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TCTGCCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

GGGGTTTTCATT

Flanking Amino Acid:

EVMHLDDILKCKPAVTRSRS

Intron Amino Acid Position:

669

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

74.2

36.1

Major BPS

100

1.24

0.5

100

Major PPT

82.7

0.73

0.8

76.6

Minor 5ss

32.3

-2

2.6

35.2

34.2

Minor BPS

45.1

-0.3

1.7

55.89

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013099

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047939

95427169 - 95485417

58249

ENSAPLT00000013698

95427292 - 95485417

58126