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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95481298_95482352_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95481298 - 95482352
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TATCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCTTTATCT
Flanking Amino Acid:
KAPASSMHKDALIYYCEALT
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
73.2
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
73.1
41.8
Minor 5ss
44.7
-0.6
3.1
59.8
38.6
Minor BPS
74
0.83
1.5
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047939
95427169 - 95485417
58249