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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95493354_95494456_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95493354 - 95494456
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TGCATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTCCTTTGCATT
Flanking Amino Acid:
HVHYMTSMIERLTGQETDNL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81
0.7
0.9
72.6
42.2
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
43.6
-0.4
1.8
57.95
39.6

Associated Gene:

Gene:
GMNN
Ensembl Gene ID:
ENSAPLG00000013031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013580
95492860 - 95498768
5909