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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95494568_95494642_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95494568 - 95494642
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTGAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTTTTTGAACA
Flanking Amino Acid:
LYEVLQENEKLHKEIEQKDG
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.7
44.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.1
0.57
1
70
39.4
Minor 5ss
41.6
-0.9
3
60.2
44.3
Minor BPS
68.6
0.58
1.3
76.57
34.1

Associated Gene:

Gene:
GMNN
Ensembl Gene ID:
ENSAPLG00000013031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013580
95492860 - 95498768
5909