About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95494726_95495459_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95494726 - 95495459
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
CTTCTTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATCTTCTTACTT
Flanking Amino Acid:
DIIQAVDLIKKSPSSQYWKE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.1
40.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84
0.76
0.7
81.8
28.6
Minor 5ss
35
-1.7
3.5
48.7
45.5
Minor BPS
64.1
0.52
1.6
77.24
40.1

Associated Gene:

Gene:
GMNN
Ensembl Gene ID:
ENSAPLG00000013031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013580
95492860 - 95498768
5909