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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95495596_95495949_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95495596 - 95495949
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTGCTCTGAAGT
Flanking Amino Acid:
KGCLVGRGNEKKSSVKRKLW
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
79.8
0.67
0.9
74
36.1
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
54.8
0.23
1.8
73.85
42.9

Associated Gene:

Gene:
GMNN
Ensembl Gene ID:
ENSAPLG00000013031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013580
95492860 - 95498768
5909