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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95508769_95510244_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95508769 - 95510244
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GGATTGTAAATC
Flanking Amino Acid:
MYIAFVFKDKKKKSALFEVS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.1
69.7
43.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
45.1
-0.5
2.6
58.7
45.8
Minor BPS
43.8
-0.4
2.2
51.91
39.6

Associated Gene:

Gene:
C6orf62
Ensembl Gene ID:
ENSAPLG00000013019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032142
95508640 - 95525685
17046
ENSAPLT00000022479
95508640 - 95518662
10023
ENSAPLT00000013555
95508282 - 95512928
4647