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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95511129_95511827_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95511129 - 95511827
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCACGCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTATCATT
Flanking Amino Acid:
GSDEAFRPVQAKFEFHHGDY
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.5
0.28
0.9
55
34.8
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
53.6
0.19
2
77.78
39

Associated Gene:

Gene:
C6orf62
Ensembl Gene ID:
ENSAPLG00000013019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032142
95508640 - 95525685
17046
ENSAPLT00000022479
95508640 - 95518662
10023
ENSAPLT00000013555
95508282 - 95512928
4647