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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95511963_95512488_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95511963 - 95512488
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATGTTTAATA
Flanking Amino Acid:
FLFIDRQHLQTPKNKATIFK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.1
0.54
0.8
65.9
36
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
60.1
0.31
1.7
67.35
40

Associated Gene:

Gene:
C6orf62
Ensembl Gene ID:
ENSAPLG00000013019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022479
95508640 - 95518662
10023
ENSAPLT00000013555
95508282 - 95512928
4647
ENSAPLT00000032142
95508640 - 95525685
17046