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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95526802_95528966_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95526802 - 95528966
Intron Length:
2165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTATCTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TGCATGTTGACA
Flanking Amino Acid:
EPPPRMDPGGCIDLTADASD
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
76.7
0.6
0.8
73.9
36
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
47.4
-0.2
2.1
59.09
40.8

Associated Gene:

Gene:
TDP2
Ensembl Gene ID:
ENSAPLG00000030813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031131
95525476 - 95532597
7122