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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95529141_95530410_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95529141 - 95530410
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
TTGCTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTAATTTAAAA
Flanking Amino Acid:
RARGVCSYLALYSPDVVFLQ
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
72.7
38.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.3
0.61
1
74
40.4
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
56.2
0.19
1.6
67.55
38.1

Associated Gene:

Gene:
TDP2
Ensembl Gene ID:
ENSAPLG00000030813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031131
95525476 - 95532597
7122