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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95531563_95532315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95531563 - 95532315
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATTTTGACAACA
Flanking Amino Acid:
GGDTNLRDSEVTKLGGLPNN
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
79.8
35.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
35.1
-1.7
2.7
42.1
44.6
Minor BPS
45.7
-0.3
2.4
66.71
39.6

Associated Gene:

Gene:
TDP2
Ensembl Gene ID:
ENSAPLG00000030813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031131
95525476 - 95532597
7122