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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95667979_95672806_F

Intron Information:

Intron Rank:
138756
Intron Class:
major
Intron Phase:
Intron Coordinates:
95667979 - 95672806
Intron Length:
4828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATCGATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATATCAATAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.2
0.48
0.9
62.2
43.5
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
48.1
-0.2
2
59
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024742
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035071
95667195 - 95673095
5901