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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95731921_95735348_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95731921 - 95735348
Intron Length:
3428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTGC
5'SS Class:
major
3'SS Sequence:
TTCCCTGTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTGCTTATAAGA
Flanking Amino Acid:
SKKSEASKKKTAQTVLVVVV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
66.5
40.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
77.8
0.63
0.8
75.9
32.5
Minor 5ss
38.5
-1.3
3.2
52.5
44.7
Minor BPS
45
-0.3
1.8
53.7
38.8

Associated Gene:

Gene:
GALR1
Ensembl Gene ID:
ENSAPLG00000011047
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011502
95731603 - 95743134
11532