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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95735415_95742444_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95735415 - 95742444
Intron Length:
7030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGCAA
5'SS Class:
major
3'SS Sequence:
TTAATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCAAATTAATC
Flanking Amino Acid:
LLLISFCYAKVLNHLHKKLR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
61.8
40.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.9
0.76
0.8
81.3
35.9
Minor 5ss
23.2
-3.1
3.2
28.3
43.9
Minor BPS
48.4
-0.1
1.8
58.33
40.2

Associated Gene:

Gene:
GALR1
Ensembl Gene ID:
ENSAPLG00000011047
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011502
95731603 - 95743134
11532