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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95788874_95790172_F

Intron Information:

Intron Rank:
127457
Intron Class:
major
Intron Phase:
Intron Coordinates:
95788874 - 95790172
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTACTAATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.5
0.57
0.7
69
31.5
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
44.2
-0.5
1.8
48.74
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018745
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021528
95788543 - 95795036
6494