About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95840455_95868414_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95840455 - 95868414
Intron Length:
27960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
AATACCTAATCT
Flanking Amino Acid:
REHSADKSTKNAETKVEEAA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
70
0.5
1
67
39.8
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
52
0.14
2
72.58
43.8

Associated Gene:

Gene:
MBP
Ensembl Gene ID:
ENSAPLG00000014659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033032
95816098 - 95924906
108809
ENSAPLT00000025278
95814708 - 95924950
110243
ENSAPLT00000015279
95828013 - 95924906
96894
ENSAPLT00000038186
95816098 - 95924906
108809