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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95868506_95906905_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95868506 - 95906905
Intron Length:
38400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTATTCATATCT
Flanking Amino Acid:
QQSSEDNEVFGEADVNQNNG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
53.4
0.18
1.9
74.49
41.8

Associated Gene:

Gene:
MBP
Ensembl Gene ID:
ENSAPLG00000014659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015279
95828013 - 95924906
96894
ENSAPLT00000033032
95816098 - 95924906
108809
ENSAPLT00000029169
95850642 - 95920511
69870
ENSAPLT00000025278
95814708 - 95924950
110243
ENSAPLT00000025079
95852407 - 95925300
72894
ENSAPLT00000038186
95816098 - 95924906
108809