Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95919962_95920430_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95919962 - 95920430

Intron Length:

469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTCTC

5'SS Class:

major

3'SS Sequence:

TATTGGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GGTTTTATAATT

Flanking Amino Acid:

NPVVHFFKNIVSPRTPPPMQ

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

70.9

39.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

76.7

0.6

0.9

73.8

41.4

Minor 5ss

41.4

-1

3.1

59.7

38.9

Minor BPS

58.3

0.34

1.6

73.88

37.1

Associated Gene:

Gene:

MBP

Ensembl Gene ID:

ENSAPLG00000014659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025278

95814708 - 95924950

110243

ENSAPLT00000038186

95816098 - 95924906

108809

ENSAPLT00000025079

95852407 - 95925300

72894

ENSAPLT00000033032

95816098 - 95924906

108809

ENSAPLT00000015279

95828013 - 95924906

96894

ENSAPLT00000032329

95892476 - 95925300

32825

ENSAPLT00000029169

95850642 - 95920511

69870