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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95920467_95921068_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95920467 - 95921068
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTACATGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACAT
Flanking Amino Acid:
PRTPPPMQAKGRGLSLTRFS
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
71.7
0.49
1
65
40.2
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
64.2
0.52
1.7
81.62
39.7

Associated Gene:

Gene:
MBP
Ensembl Gene ID:
ENSAPLG00000014659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025278
95814708 - 95924950
110243
ENSAPLT00000025079
95852407 - 95925300
72894
ENSAPLT00000015279
95828013 - 95924906
96894
ENSAPLT00000038186
95816098 - 95924906
108809
ENSAPLT00000032329
95892476 - 95925300
32825