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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95920467_95922084_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95920467 - 95922084
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGCAATACAT
Flanking Amino Acid:
PRTPPPMQAKGGEGHKPGYG
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85.6
0.8
0.8
80.4
31.6
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
44.7
-0.3
2.2
71.49
44.8

Associated Gene:

Gene:
MBP
Ensembl Gene ID:
ENSAPLG00000014659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033032
95816098 - 95924906
108809