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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95922211_95924849_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95922211 - 95924849
Intron Length:
2639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAC
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACCTTTTAATT
Flanking Amino Acid:
QGTLSKIFKLGGSGSRPGSR
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.1
35.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
36.5
-1.5
3.4
46
44.9
Minor BPS
65.4
0.56
1.2
73.66
37.7

Associated Gene:

Gene:
MBP
Ensembl Gene ID:
ENSAPLG00000014659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025278
95814708 - 95924950
110243
ENSAPLT00000025079
95852407 - 95925300
72894
ENSAPLT00000038186
95816098 - 95924906
108809
ENSAPLT00000015279
95828013 - 95924906
96894
ENSAPLT00000033032
95816098 - 95924906
108809
ENSAPLT00000032329
95892476 - 95925300
32825