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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95935233_95936964_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95935233 - 95936964
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGGT
5'SS Class:
major
3'SS Sequence:
TTCTCTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGTTCTAAAAC
Flanking Amino Acid:
KAFKRATHLKEHMQTHQAGP
Intron Amino Acid Position:
1795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
70.7
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
0.8
76.6
32
Minor 5ss
40.6
-1.1
3.2
58.8
45.7
Minor BPS
53.7
0.1
1.8
63.77
41.7

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756